time   calls  line
                  1 function d = flagData(d, bitmask, flagTime)
                  2 
                  3 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                  4 % 
                  5 %  function d = flagData(d, [bitmask], [flagTime])
                  6 %
                  7 %   flags the data (from output of flagMask.m) according to the bitmask
                  8 %   passed as input.  You may also pass a timerange of the data to be
                  9 %   flagged.  [ ] indicates optional arguments.  if none are passed, will
                 10 %   default to a set value.
                 11 %  
                 12 %   1st step is to flag on the bitmask (where bits are defined in flagMask.m)
                 13 %   2nd step is to flag on the flagTime (if specified)
                 14 %   RFI flagging occurs in deglitch module
                 15 %
                 16 %   on exiting, you will now have a field that is
                 17 %   d.flags.slow, d.flags.medium, d.flags.fast, with another field called
                 18 %   d.flags.bit.(slow/medium/fast), which will list the reason why the data was flagged.
                 19 %
                 20 %    in the .bit fields, the bits correspond
                 21 %    to the following:
                 22 %    bit 0 - flagged by bitmask  (antenna diagnostics flag)
                 23 %    bit 1 - user flag
                 24 %    bit 2 - time flag
                 25 %    bit 3 - deglitch
                 26 %    bit 4 - rfi
                 27 %    bit 5 - position  
                 28 %    bit 6 - alpha     
                 29 %    bit 7 - tsys      
                 30 %    bit 8 - noise     
                 31 %    bit 9 - gain      
                 32 %    bit 10 - tau       
                 33 %    bit 11- astro     
                 34 %    bit 12- rfactor   
                 35 %
                 36 %    in the d.flags.(slow/medium/fast), the vectors will be booleans, with
                 37 %    it set to high if the data is flagged for any reason.
                 38 %
                 39 %    sjcm
                 40 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                 41 
                 42 % check inputs
             1   43 if nargin==1 
                 44   bitmask = [0 1 5 6 7 8 10 12];
                 45   flagTime = [];
             1   46 elseif nargin==2 
             1   47   flagTime = []; 
             1   48 end 
                 49 
                 50 % set the flags.
  0.21       1   51 d = dataFilter(d, bitmask, flagTime); 
                 52 
                 53 % report back what flags got set.
  0.58       1   54 reportFlags(d, bitmask); 
                 55 
             1   56 return; 

Other subfunctions in this file are not included in this listing.