Function details for deglitchWrapper

deglitchWrapper (1 call, 7.848 sec)
Generated 05-Aug-2011 13:03:25 using cpu time.
function in file /home/LeechJ/cbass_analysis/reduc/support/deglitchWrapper.m
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Parents (calling functions)

Function Name	Function Type	Calls
reduceData	function	1

Lines where the most time was spent

Line Number	Code	Calls	Total Time	% Time	Time Plot
44	[d flag] = packd(d, flags, 'no...	1	4.886 s	62.3%
36	flags.new = deglitch(d, flagPa...	1	2.634 s	33.6%
49	d = updateFlags(d, 1);	1	0.175 s	2.2%
48	d = setNewFlag(d, flag.new.out...	1	0.087 s	1.1%
40	setPlotDisplay(plotparams.plot...	1	0.044 s	0.6%
All other lines			0.022 s	0.3%
Totals			7.848 s	100%

Children (called functions)

Function Name	Function Type	Calls	Total Time	% Time	Time Plot
packd	function	1	4.886 s	62.3%
deglitch	function	1	2.634 s	33.6%
updateFlags	function	1	0.175 s	2.2%
setNewFlag	function	1	0.087 s	1.1%
setPlotDisplay	function	1	0.044 s	0.6%
logcal	function	2	0 s	0%
checkpar	function	1	0 s	0%
Self time (built-ins, overhead, etc.)			0.022 s	0.3%
Totals			7.848 s	100%

Code Analyzer results

Line number	Message
1	Extra semicolon is unnecessary.

Coverage results
[ Show coverage for parent directory ]

Total lines in function	54
Non-code lines (comments, blank lines)	31
Code lines (lines that can run)	23
Code lines that did run	14
Code lines that did not run	9
Coverage (did run/can run)	60.87 %

Function listing

   time   calls  line
                  1 function d = deglitchWrapper(d, plotparams, parm, field);
                  2 
                  3 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                  4 %
                  5 %  function d = deglitchWrapper(d, plotparams, parm, field);
                  6 %
                  7 %    reduceData function that calls the deglitching algorithm with
                  8 %    parameters parm.
                  9 %
                 10 %    sjcm
                 11 %
                 12 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
                 13 
                 14 % check if we have the flagging parameters
  0.01       1   15 parFlag = checkpar(parm, 'deglitch'); 
                 16 
             1   17 if(parFlag) 
             1   18   flagParams = [parm.deglitch.chan1 parm.deglitch.chan2]; 
                 19 else
                 20   display('Using Default deglitching parameters');
                 21   flagParams = [10 5];
                 22 end
                 23 
             1   24 [d,q] = logcal(d, 'deglitch'); 
             1   25 if (q) 
                 26   disp('Deglitching has already been applied')
                 27   disp(' ')
                 28   d=checkstatus(d);
                 29   return
                 30 end
                 31 
                 32 % first we separate the old flags
             1   33 flags.old.bit = d.flags.bit; 
                 34 
                 35 % if deglitching hasn't been done, do it.
  2.63       1   36 flags.new = deglitch(d, flagParams); 
                 37 
             1   38 display('Plotting data'); 
                 39 
  0.04       1   40 setPlotDisplay(plotparams.plot); 
                 41 
                 42 % d in packd should be unchanged.
                 43 
  4.89       1   44 [d flag] = packd(d, flags, 'none', 'deglitch', plotparams, 'Deglitching Plots', field); 
                 45 
                 46 % next we fix our flags  -- all the ones in this stage, including
                 47 % interactive flagging, are in flag.new.out
  0.09       1   48 d = setNewFlag(d, flag.new.out, 'deglitch'); 
  0.17       1   49 d = updateFlags(d, 1); 
                 50 
                 51 
             1   52 d = logcal(d, 'deglitch'); 
                 53 
             1   54 return;

Other subfunctions in this file are not included in this listing.